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Category: Programming for Biosciences

A guiding platform for Python scripts for analyzing genomic sequences to R packages for statistical analysis in bioinformatics; practical tips, tutorials, and insights, to help programming in your biological data science research.

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Mastering Seurat Subset: A Comprehensive Guide
R ProgrammingProgramming for BiosciencesTutorials

Mastering Seurat Subset: A Comprehensive Guide

Seurat is a powerful tool for single-cell RNA sequencing data analysis. One of its key functionalities is the ability to subset data, allowing researchers to focus on specific cell populations or features. This guide will…

by Tanzeela ArshadJune 10, 2024August 5, 2024
6 mins read
Scanpy vs Seurat: Two Powerhouses for Single Cell RNA-seq Data Analysis
BioinformaticsProgramming for Biosciences

Scanpy vs Seurat: Two Powerhouses for Single Cell RNA-seq Data Analysis

Single-cell RNA sequencing (scRNA-seq) has revolutionized our understanding of cellular diversity and gene expression. Two of the most popular tools for analyzing scRNA-seq data are Scanpy and Seurat. Both have their strengths and weaknesses, and…

by Tanzeela ArshadJune 4, 2024June 4, 2024
7 mins read
Visualizing Single-Cell Data with Scanpy UMAP, Dotplot & Heatmap: A Step-by-Step Guide
TutorialsBioinformaticsProgramming for BiosciencesPython

Visualizing Single-Cell Data with Scanpy UMAP, Dotplot & Heatmap: A Step-by-Step Guide

Single-cell RNA sequencing (scRNA-seq) has revolutionized our understanding of cellular biology. Tools like Scanpy, a comprehensive library for single-cell analysis in Python, are crucial for interpreting this data. In this tutorial, we will explore three…

by Tanzeela ArshadJune 3, 2024August 5, 2024
7 mins read
Python for Genomics: How to Simplify Complex Biological Data
PythonGenomic Data AnalysisGenomic Data ScienceProgramming for Biosciences

Python for Genomics: How to Simplify Complex Biological Data

Genomics is the study of genomes, the complete set of DNA within an organism. Understanding genomes can lead to breakthroughs in medicine, agriculture, and biology. Python, a versatile and powerful programming language, has become a…

by Tanzeela ArshadMay 31, 2024August 5, 2024
7 mins read
Single Cell RNA Sequencing: A Step by Step Scanpy Tutorial for Beginners
TutorialsProgramming for BiosciencesPython

Single Cell RNA Sequencing: A Step by Step Scanpy Tutorial for Beginners

Welcome to the world of single-cell RNA sequencing (scRNA-seq) analysis! In this Scanpy tutorial, we will walk you through the basics of using Scanpy, a powerful tool for analyzing scRNA-seq data. Whether you are a…

by Tanzeela ArshadMay 29, 2024August 5, 2024
8 mins read
What is R Programming in Data Science? An Ultimate Guide
R ProgrammingProgramming for Biosciences

What is R Programming in Data Science? An Ultimate Guide

In the world of data science, many tools and languages are available to analyze and interpret data. One of the most powerful and widely used tools is R programming. But what is R programming in…

by Tanzeela ArshadMay 21, 2024August 5, 2024
8 mins read
If Else R Programming Tutorial: Simple to Complex Examples
R ProgrammingProgramming for Biosciences

If Else R Programming Tutorial: Simple to Complex Examples

If else R programming is a fundamental concept used in controlling the flow of execution based on conditions. This approach allows programmers to execute certain blocks of code only when specified conditions are met. Understanding…

by Tanzeela ArshadApril 16, 2024August 5, 2024
7 mins read
An Ultimate Step by Step Guide to Perform Partial Correlation in R
TutorialsBiostatisticsProgramming for BiosciencesR Programming

An Ultimate Step by Step Guide to Perform Partial Correlation in R

Partial correlation is a statistical technique that helps to understand the relationship between two variables, controlling for the effect of one or more additional variables. R is a popular programming language for statistical computing with…

by Tanzeela ArshadApril 14, 2024August 5, 2024
8 mins read
How to Perform One Sample T Test in R?
TutorialsBiostatisticsData Science BeginnersProgramming for BiosciencesR Programming

How to Perform One Sample T Test in R?

Performing statistical tests is crucial in analyzing data to make informed decisions. One such test is the One Sample T Test, which helps determine if the mean of a single sample is significantly different from…

by Tanzeela ArshadApril 12, 2024August 5, 2024
6 mins read

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